title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Excitadoras_FM {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/MA_HC_Excitadoras_FM.RData")
```ENSG00000089847
Statistics of ENSG00000089847 meta-analisys
kable(sig.genes.df['ENSG00000089847',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000089847 | ANKRD24 | -0.3928164 | -0.3142151 | -0.2356138 | 0 | 0.3535686 | 0.5521 | 0.0401034 | 0 | 0 | 1 | 0 | 0 | 11.34254 | 2 | 1 | Study43 | 0.5024892 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000089847_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000089847_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000089847_INFLUENCE.png")
ENSG00000104435
Statistics of ENSG00000104435 meta-analisys
kable(sig.genes.df['ENSG00000104435',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000104435 | STMN2 | -1.293802 | -1.0874 | -0.8809981 | 0 | 0.3397306 | 0.5599848 | 0.1053091 | 0 | 0 | 1 | 0 | 0 | 21.01297 | 2 | 2 | Study43 | 0.5045733 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104435_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104435_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104435_INFLUENCE.png")
ENSG00000104722
Statistics of ENSG00000104722 meta-analisys
kable(sig.genes.df['ENSG00000104722',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000104722 | NEFM | -1.204537 | -1.035692 | -0.8668477 | 0 | 0.4473494 | 0.5035964 | 0.0861467 | 0 | 0 | 1 | 0 | 0 | 29.06845 | 2 | 2 | Study43 | 0.5006595 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104722_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104722_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000104722_INFLUENCE.png")
ENSG00000105613
Statistics of ENSG00000105613 meta-analisys
kable(sig.genes.df['ENSG00000105613',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000105613 | MAST1 | -0.3283674 | -0.2577812 | -0.1871951 | 0 | 0.7411504 | 0.3892926 | 0.036014 | 0 | 0 | 1 | 0 | 0 | 9.250599 | 2 | 2 | Study43 | 0.500874 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000105613_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000105613_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000105613_INFLUENCE.png")
ENSG00000128739
Statistics of ENSG00000128739 meta-analisys
kable(sig.genes.df['ENSG00000128739',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000128739 | SNRPN | -3.57849 | -3.14989 | -2.72129 | 0 | 0.6515698 | 0.419552 | 0.2186774 | 0 | 0 | 1 | 0 | 0 | 42.21225 | 2 | 2 | Study43 | 0.5056251 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000128739_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000128739_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000128739_INFLUENCE.png")
ENSG00000133169
Statistics of ENSG00000133169 meta-analisys
kable(sig.genes.df['ENSG00000133169',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000133169 | BEX1 | -0.1879682 | -0.1514166 | -0.1148651 | 0 | 0.2058784 | 0.6500172 | 0.0186491 | 0 | 0 | 1 | 0 | 0 | 12.28238 | 2 | 1 | Study43 | 0.5000983 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000133169_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000133169_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000133169_INFLUENCE.png")
ENSG00000139767
Statistics of ENSG00000139767 meta-analisys
kable(sig.genes.df['ENSG00000139767',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139767 | SRRM4 | -3.174943 | -2.485415 | -1.795886 | 0 | 0.4402946 | 0.5069803 | 0.3518069 | 0 | 0 | 1 | 0 | 0 | 8.993561 | 2 | 2 | Study43 | 0.5612952 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000139767_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000139767_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000139767_INFLUENCE.png")
ENSG00000141668
Statistics of ENSG00000141668 meta-analisys
kable(sig.genes.df['ENSG00000141668',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000141668 | CBLN2 | -3.518629 | -3.074971 | -2.631313 | 0 | 0.269432 | 0.6037131 | 0.2263601 | 0 | 0 | 1 | 0 | 0 | 37.68135 | 2 | 2 | Study43 | 0.5061244 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000141668_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000141668_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000141668_INFLUENCE.png")
ENSG00000152954
Statistics of ENSG00000152954 meta-analisys
kable(sig.genes.df['ENSG00000152954',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000152954 | NRSN1 | -0.1789719 | -0.1408863 | -0.1028007 | 0 | 0.74308 | 0.388676 | 0.0194318 | 0 | 0 | 1 | 0 | 0 | 9.510717 | 2 | 2 | Study43 | 0.5001041 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000152954_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000152954_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000152954_INFLUENCE.png")
ENSG00000162374
Statistics of ENSG00000162374 meta-analisys
kable(sig.genes.df['ENSG00000162374',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000162374 | ELAVL4 | -1.637989 | -1.383444 | -1.1289 | 0 | 0.1351231 | 0.7131783 | 0.1298722 | 0 | 0 | 1 | 0 | 0 | 22.4469 | 2 | 2 | Study43 | 0.5076322 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162374_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162374_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162374_INFLUENCE.png")
ENSG00000162706
Statistics of ENSG00000162706 meta-analisys
kable(sig.genes.df['ENSG00000162706',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000162706 | CADM3 | -0.3014356 | -0.2366081 | -0.1717805 | 0 | 0.0059224 | 0.9386579 | 0.0330759 | 0 | 0 | 1 | 0 | 0 | 9.250599 | 2 | 2 | Study43 | 0.5001074 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162706_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162706_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000162706_INFLUENCE.png")
ENSG00000164100
Statistics of ENSG00000164100 meta-analisys
kable(sig.genes.df['ENSG00000164100',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164100 | NDST3 | -3.167455 | -2.774794 | -2.382134 | 0 | 0.0860804 | 0.7692205 | 0.2003407 | 0 | 0 | 1 | 0 | 0 | 39.09799 | 2 | 2 | Study43 | 0.5065249 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164100_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164100_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164100_INFLUENCE.png")
ENSG00000164741
Statistics of ENSG00000164741 meta-analisys
kable(sig.genes.df['ENSG00000164741',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164741 | DLC1 | -0.3889202 | -0.3078746 | -0.2268291 | 0 | 1.966938 | 0.3740115 | 0.0413505 | 0 | 0 | 1 | 0 | 0 | 10.11841 | 3 | 2 | Study43,syn52293442_hc | 0.3130033 | Study43,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164741_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164741_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000164741_INFLUENCE.png")
ENSG00000165023
Statistics of ENSG00000165023 meta-analisys
kable(sig.genes.df['ENSG00000165023',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000165023 | DIRAS2 | -0.4395447 | -0.3489177 | -0.2582907 | 0 | 0.336413 | 0.5619071 | 0.0462391 | 0 | 0 | 1 | 0 | 0 | 10.42304 | 2 | 2 | Study43 | 0.5001533 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000165023_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000165023_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000165023_INFLUENCE.png")
ENSG00000168830
Statistics of ENSG00000168830 meta-analisys
kable(sig.genes.df['ENSG00000168830',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000168830 | HTR1E | -1.250418 | -1.022763 | -0.7951083 | 0 | 0.0682019 | 0.793973 | 0.1161525 | 0 | 0 | 1 | 0 | 0 | 14.73803 | 2 | 2 | Study43 | 0.5024095 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000168830_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000168830_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000168830_INFLUENCE.png")
ENSG00000171246
Statistics of ENSG00000171246 meta-analisys
kable(sig.genes.df['ENSG00000171246',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000171246 | NPTX1 | -0.3835181 | -0.3097433 | -0.2359684 | 0 | 0.3203107 | 0.571421 | 0.0376409 | 0 | 0 | 1 | 0 | 0 | 12.62289 | 2 | 1 | Study43 | 0.500895 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000171246_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000171246_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000171246_INFLUENCE.png")
ENSG00000177511
Statistics of ENSG00000177511 meta-analisys
kable(sig.genes.df['ENSG00000177511',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000177511 | ST8SIA3 | -0.6180394 | -0.5085671 | -0.3990948 | 0 | 0.0920814 | 0.7615476 | 0.0558542 | 0 | 0 | 1 | 0 | 0 | 15.86749 | 2 | 2 | Study43 | 0.5011558 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000177511_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000177511_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000177511_INFLUENCE.png")
ENSG00000182348
Statistics of ENSG00000182348 meta-analisys
kable(sig.genes.df['ENSG00000182348',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182348 | ZNF804B | -0.6257177 | -0.4985491 | -0.3713804 | 0 | 0.428643 | 0.5126556 | 0.0648832 | 0 | 0 | 1 | 0 | 0 | 10.85658 | 2 | 2 | Study43 | 0.5014466 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182348_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182348_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182348_INFLUENCE.png")
ENSG00000182870
Statistics of ENSG00000182870 meta-analisys
kable(sig.genes.df['ENSG00000182870',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182870 | GALNT9 | -0.3719519 | -0.2995739 | -0.2271958 | 0 | 0.067849 | 0.7944948 | 0.0369283 | 0 | 0 | 1 | 0 | 0 | 12.28238 | 2 | 1 | Study43 | 0.5001494 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182870_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182870_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000182870_INFLUENCE.png")
ENSG00000184349
Statistics of ENSG00000184349 meta-analisys
kable(sig.genes.df['ENSG00000184349',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184349 | EFNA5 | -1.421789 | -1.218614 | -1.015438 | 0 | 1.348619 | 0.5095081 | 0.1036628 | 0 | 0 | 1 | 0 | 0 | 27.77784 | 3 | 3 | Study43 | 0.4678705 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000184349_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000184349_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/FM/plots/ENSG00000184349_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 16:09:20 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2